$+
run("SetVar(refinement_output, strcat(FileName(),_refinement_output.html))")
$-

<!-- $spy.gui.get_notification() -->

<!-- #includeif fs.Exists(GetVar(refinement_output)) refinement_output GetVar(refinement_output);1; -->

<!-- #ignoreif IsFileType('ires')
<table border="0" width="100%" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Extract;1 -->
<td width='12%'>
  <b>Extract</b>
</td>
<td>
$spy.gui.cif.check_for_embedded_hkl()
</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->
#ignoreif -->

<table border="0" width="$GetVar(HtmlTableWidth)" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">

<!-- ================================== -->
<!-- HEADER_ABOVE ---- LEAVE UNTOUCHED! -->
<!-- ================================== -->


<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Refinement-Program;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->

    <td width='12%'>
      <b>Program </b>
    </td>

    <td width='35%'>
      <table cellpadding="0" cellspacing="0">
        <tr>
          <td width='61%'>
<!-- #include program gui\snippets\snippet-program.htm;scope=snum;prg_type=refinement;width='20%';1; -->
          </td>
          <td width='2%'>
          </td>
          <td width='37%'>
<!-- #include method gui\snippets\snippet-method.htm;scope=snum;prg_type=refinement;width='20%';1; -->
          </td>
        </tr>
      </table>
    </td>

    <td width='15%'>
      $+
        html.Snippet("gui/snippets/input-checkbox",
        "name=USE_CLIENT_MODE@refine",
        "checked=spy.GetParam(user.refinement.client_mode, false)",
        "label=Client",
        "height=0",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        "td1=<td align='left' width="22%">",
        "onclick=spy.gui.set_client_mode(html.GetState(~name~))")
      $-
    </td>

    <td align='left' width='8%'>
      <b>Cycles </b>
    </td>
      $+
        html.Snippet("gui/snippets/input-spin-td",
        "value=spy.GetParam('snum.refinement.max_cycles')",
        "name=SET_SNUM_REFINEMENT_MAX_CYCLES",
        "onchange=spy.SetMaxCycles(html.GetValue('~name~'))",
        "min=0",
        "max=200",
        )
      $-
    <td align='right' width='8%'>
      <b>Peaks </b>
    </td>
      $+
        html.Snippet("gui/snippets/input-spin-td",
        "value=math.eval(abs(spy.GetParam(snum.refinement.max_peaks)))",
        "name=SET_SNUM_REFINEMENT_MAX_PEAKS",
        "min=0",
        "max=99",
        "onchange=spy.SetMaxPeaks(html.GetValue('~name~'))",
        )
      $-
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Set-Reflection-File;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
    <td ALIGN='left' width='12%'>
      <b>hkl file </b>
    </td>

    <td ALIGN='left' width='45%'>
<!-- #include reflection-file gui\snippets\snippet-reflection-file.htm;1; -->
    </td>
    <td ALIGN='right'>
<!-- #include reflection-date reflection-date.htm;1; -->
    </td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<!-- #ignoreif not IsFileType('ires')
<!-- #ignoreif not(spy.IsEDData())
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=ED;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
<td width="12%">
  <b>ED SFAC</b>
</td>
<td width="45%">
    $+
     html.Snippet("gui/snippets/input-combo", "name=ed-tables@refine",
      "width=100%",
      "items='Peng-1999 (4G)<-Peng-1999;UCLA-2022 (4G)<-UCLA-2022;CAP-2022 (4G)<-CAP-2022'",
      "value=spy.GetParam('snum.smtbx.electron_table_name')",
      "onchange=spy.sfac.set_ED_tables(html.GetValue(~name~))",
      "readonly=true")
    $-
</td>
<td>
$+
  html.Snippet("gui/snippets/input-button", "name=UPDATE_SFAC",
      "value=Update SFAC", "fit=true", "flat=false",
      "onclick=spy.sfac.generate_ED_SFAC auto true")
$-
</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->
#ignoreif -->
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Weights,_Extinction_and_ACTA;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->

    <td width='12%'>
      <b>Weight </b>
    </td>
    <td width='4%' align='left'>
      $+
        html.Snippet("gui/snippets/input-checkbox",
        "name=SET_SNUM_REFINEMENT_UPDATE_WEIGHT",
        "checked=spy.GetParam('snum.refinement.update_weight')",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        "onclick=spy.SetParam('snum.refinement.update_weight', html.GetState('~name~'))",
        )
       $-
    </td>
    <td width='31%' align='left'>
      $spy.gui.tools.weightGuiDisplay()
    </td>
    
    $spy.gui.tools.make_exti_swat_gui()

    <td width='12%'>
      $+
        html.Snippet("gui/snippets/input-combo",
        "name=REFINEMENT_ACTA",
        "items=No ACTA;ACTA NOHKL;ACTA",
        "value=Ins('acta')",
        "onchange=spy.actaGuiDisplay(html.GetValue('~name~'))",
        "readonly=False",
        "onchangealways=True",
        "bgcolor=spy.refinement_acta_bg_colour()",
        )
      $-
    </td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<!-- ==================================== SOLVENT MASKING INTERFACE BEGIN == -->
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Refinement-Masks;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
      $+
        html.Snippet("gui/snippets/input-checkbox-td",
        "name=SNUM_REFINEMENT_USE_SOLVENT_MASK",
        "label=Use Mask ",
        "checked=spy.GetParam('snum.refinement.use_solvent_mask')",
        "onclick=spy.SetMasking(html.GetState(~name~))>>html.update()",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        "disabled=spy.gui.IsEDRefinement()",
        "td1=<td width=16%>"
        )
      $-

<ignore test="not strcmp(spy.GetParam('snum.refinement.use_solvent_mask'), True)">

<ignore test="strcmp(spy.gui.IsEDRefinement(), False)">
<td>
Use a solvent mask (smtbx.mask or SQUEEZE)
</td>
</ignore>
</ignore>

<ignore test="strcmp(spy.gui.IsEDRefinement(), True)">
<td>
Solvent masking is currently ignored for ED Dynamical Refinement
</td>
</ignore>


<ignore test="strcmp(spy.gui.IsEDRefinement(), False)">

<!-- #ignoreif not spy.GetParam('snum.refinement.use_solvent_mask')

<!-- #ignoreif not GetVar("HavePlaton")
  $+
    html.Snippet("gui/snippets/input-combo-td",
    "name=SNUM_REFINEMENT_RECOMPUTE_MASK_BEFORE_REFINEMENT_PRG",
    "value=spy.GetParam('snum.refinement.recompute_mask_before_refinement_prg')",
    "items=Olex2;Platon",
    "onchange=spy.change_hklsrc_according_to_mask_prg(html.GetValue('~name~'))",
    "bgcolor=GetVar(HtmlTableGroupBgColour)",
    "disabled=spy.gui.IsEDRefinement()",
    "td1=<td width=20%>"
    )
  $-
#ignoreif -->

  $+
    html.Snippet("gui/snippets/input-checkbox-td",
    "name=SNUM_REFINEMENT_RECOMPUTE_MASK_BEFORE_REFINEMENT",
    "label=Update Mask",
    "checked=spy.GetParam('snum.refinement.recompute_mask_before_refinement')",
    "oncheck=spy.SetMasking(html.GetState(~name~))>>
spy.SetParam('snum.refinement.recompute_mask_before_refinement','true')>>
html.SetState('SNUM_REFINEMENT_USE_SOLVENT_MASK', 'true')",
    "onuncheck=spy.SetParam('snum.refinement.recompute_mask_before_refinement','false')",
    "bgcolor=GetVar(HtmlTableFirstcolColour)",
    "disabled=spy.gui.IsEDRefinement()",
    )
  $-

<!-- #ignoreif strcmp(spy.GetParam('snum.refinement.recompute_mask_before_refinement_prg'), 'Olex2')
  <td width="11%"> </td>
  <td width="10%">
  </td>
  <td width="11%"> </td>
  <td width="10%">
  </td>
#ignoreif -->


<!-- #ignoreif strcmp(spy.GetParam('snum.refinement.recompute_mask_before_refinement_prg'), 'Platon')
  <td width="11%"> solvent r</td>
  <td width="10%">
    <font size="$GetVar('HtmlFontSizeControls')">
    <input
      type="text"
      name = "SET_SNUM_MASKS_SOLVENT_RADIUS"
      width="100%"
      valign="center"
      bgcolor="GetVar('HtmlTableBgColour')"
      fgcolor="GetVar('HtmlFontColour')"
      value="spy.GetParam('snum.masks.solvent_radius')"
      onchange="spy.SetParam('snum.masks.solvent_radius',html.GetValue('~name~'))"
    >
    </font>
  </td>
  <td width="11%">truncation</td>
  <td width="10%">
    <font size="$GetVar('HtmlFontSizeControls')">
    <input
      type="text"
      name = "SET_SNUM_MASKS_SHRINK_TRUNCATION_RADIUS"
      width="100%"
      height="GetVar('HtmlInputHeight')"
      valign="center"
      bgcolor="GetVar('HtmlTableBgColour')"
      fgcolor="GetVar('HtmlFontColour')"
      value="spy.GetParam('snum.masks.shrink_truncation_radius')"
      onchange="spy.SetParam('snum.masks.shrink_truncation_radius',html.GetValue('~name~'))"
    >
    </font>
  </td>
#ignoreif -->
</ignore>

<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


<ignore test="strcmp(spy.gui.IsEDRefinement(), False)">

<tr ALIGN='left' width='100%%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Masking-Info;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
<td>
<!-- #include mask_info spy.gui.tools.get_mask_info();1; -->
</td>
<!-- TABLE CLOSES AT THE END OF THE SECTION -->
#ignoreif -->

<!-- #ignoreif spy.GetParam('snum.refinement.use_solvent_mask')
#ignoreif -->
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->
<!-- ==================================== SOLVENT MASKING INTERFACE END ==== -->
</ignore>


<!-- ========================================== NOSPHERA2 INTERFACE BEGIN == -->
<!-- #ignoreif not spy.tools.show_nsff()
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=NoSpherA2;1 -->

<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
      $+
        html.Snippet("gui/snippets/input-checkbox-td",
        "name=USE_ASPHERICAL@refine",
        "checked=spy.GetParam('snum.NoSpherA2.use_aspherical')",
        "label=NoSpherA2 ",
        "height=0",
        "td1=<td align='left' width="22%">",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        "onclick=spy.NoSpherA2.toggle_GUI()")
      $-

<!-- #ignoreif spy.GetParam('snum.NoSpherA2.use_aspherical')
<td>
Use non-spherical atomic scattering factors
</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

#ignoreif -->



<!-- #ignoreif not spy.GetParam('snum.NoSpherA2.use_aspherical')
    $+
      html.Snippet("gui/snippets/input-checkbox-td",
      "name=calculate_new@refine",
      "label=Update Table",
      "bgcolor=GetVar(HtmlTableFirstcolColour)",
      "td1=<td align='left' width="22%">",
      "checked=spy.GetParam('snum.NoSpherA2.Calculate')",
      "onclick=spy.SetParam('snum.NoSpherA2.Calculate', html.GetState('~name~'))>>if strcmp(spy.GetParam('snum.NoSpherA2.Calculate'),True) then 'html.ItemState h3-NoSpherA2-extras 1' else 'html.ItemState h3-NoSpherA2-extras 2'")
    $-

<!-- #ignoreif spy.GetParam('snum.NoSpherA2.Calculate')
<td width='35%' align='right'>
  $+
    html.Snippet("gui/snippets/input-combo",
    "name=SNUM_REFINEMENT_NSFF_TSC_FILE",
    "items=spy.NoSpherA2.get_tsc_file_dropdown_items()",
    "value=spy.GetParam('snum.NoSpherA2.file')",
    "onchange=spy.SetParam('snum.NoSpherA2.file',html.GetValue('~name~'))",
    "onchangealways=True"
    )
  $-
</td>

<td width='20%' align='right' >
<b>.tsc File</b>
</td>
#ignoreif -->


<!-- #ignoreif not spy.GetParam('snum.NoSpherA2.Calculate')

<td width='35%' align='left'>
  $+
    html.Snippet("gui/snippets/input-combo",
    "name=SNUM_REFINEMENT_NSFF_SOURCE",
    "items='Please Select';strcat(spy.NoSpherA2.getwfn_softwares(),
            spy.gui.GetFileListAsDropdownItems(FilePath(),'wfn;wfx;gbw;molden'))",
    "value=spy.GetParam('snum.NoSpherA2.source')",
    "onchange=spy.NoSpherA2.change_tsc_generator(html.GetValue('~name~'))",
    "onchangealways=True"
    )
  $-
</td>

<td width='20%' align='right'>
<b>Source of .tsc</b> 
</td>
#ignoreif -->
<td>
$spy.MakeHoverButton('toolbar-delete', 'spy.NoSpherA2.wipe_wfn_jobs_folder()')
</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


<!-- #include NoSpherA2_refine_interface ..\util\pyUtil\NoSpherA2\NoSpherA2_refine_interface.htm;help_ext=NoSpherA2 Refinement;1; -->
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

#ignoreif --> -- NSFF not used
#ignoreif --> -- NSFF disabled
<!-- ========================================== NOSPHERA2 INTERFACE END ==== -->


<!-- #ignoreif not(ostr.like(spy.GetParam(snum.refinement.program), "olex2.refine*"))


<!--FIRST LINE OF ED STUFF-->
<!-- #ignoreif not spy.ac.isMEDEnabled()
<!-- #ignoreif not(spy.IsEDData())

<table border="0" width="$GetVar(HtmlTableWidth)" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">

<!-- #includeif strcmp(GetVar(ACED_DEV),True) ed_gui basedir()/util/pyUtil/ACED7d/ED_refine_interface.htm;gui\blocks\tool-h3-off.htm;image=h3-ED-Settings;onclick=;1; -->

<!-- #includeif not(strcmp(GetVar(ACED_DEV),True)) ed_gui basedir()/util/pyUtil/ACED/ED_refine_interface.htm;gui\blocks\tool-h3-off.htm;image=h3-ED-Settings;onclick=;1; -->
</table>
#ignoreif -->
#ignoreif -->
<!--END OF FIRST LINE OF ED STUFF-->


<!--SECOND LINE OF ED STUFF-->
<!-- #ignoreif not spy.ac.isMEDEnabled()
<!-- #ignoreif not(spy.IsEDData())

<table border="0" width="$GetVar(HtmlTableWidth)" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">

<!-- #includeif strcmp(GetVar(ACED_DEV),True) ed_gui_extra basedir()/util/pyUtil/ACED7d/ED_refine_interface_extra.htm;gui\blocks\tool-h3-off.htm;image=h3-ED-Dynamical-Data;onclick=;2; -->

<!-- #includeif not(strcmp(GetVar(ACED_DEV),True)) ed_gui_extra basedir()/util/pyUtil/ACED/ED_refine_interface_extra.htm;gui\blocks\tool-h3-off.htm;image=h3-ED-Dynamical-Data;onclick=;2; -->

</table>
#ignoreif -->
#ignoreif -->
<!--END OF SECOND LINE OF ED STUFF-->


<!--THIRD LINE OF ED STUFF-->

<!-- #ignoreif not spy.ac.isMEDEnabled()
<!-- #ignoreif not(spy.IsEDData())
<table border="0" width="$GetVar(HtmlTableWidth)" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">

<!-- #ignoreif strcmp(spy.GetParam('olex2.debug'),False) -->
<!-- #includeif strcmp(GetVar(ACED_DEV),True) ed_gui_testing basedir()/util/pyUtil/ACED7d/ED_refine_interface_testing.htm;gui\blocks\tool-h3-off.htm;image=h3-ED-Testing;onclick=;2; -->
<!-- #includeif strcmp(GetVar(ACED_DEV),False) ed_gui_testing basedir()/util/pyUtil/ACED/ED_refine_interface_testing.htm;gui\blocks\tool-h3-off.htm;image=h3-ED-Testing;onclick=;2; -->
<!-- ignoreif# olex2.debug -->

</table>
#ignoreif -->
#ignoreif -->
<!--END OF THIRD LINE OF ED STUFF-->


#ignoreif --> <!-- olex2.refine -->


#ignoreif --> <!-- Closes if not ires -->
<!-- ================================== -->
<!-- FOOTER BELOW      LEAVE UNTOUCHED! -->
<!-- ================================= -->
</table>


<table border="0" width="$GetVar(HtmlTableWidth)" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">
<!-- #includeif fs.Exists('refinement-settings-extra.htm') refinement-settings-extra refinement-settings-extra.htm;gui\blocks\tool-h3-off.htm;image=h3-Refinement-Settings-Extra;colspan=1;onclick=;2; -->
</table>